Appendix B — References

Published

Jun 2026

Aleksander, Suzi A., James Balhoff, Seth Carbon, et al. 2023. “The Gene Ontology Knowledgebase in 2023.” Genetics 224 (1): iyad031. https://doi.org/10.1093/genetics/iyad031.

Cox, Jürgen, and Matthias Mann. 2008. “MaxQuant Enables High Peptide Identification Rates, Individualized p.p.b.-Range Mass Accuracies and Proteome-Wide Protein Quantification.” Nature Biotechnology 26 (12): 1367–72. https://doi.org/10.1038/nbt.1511.

Ritchie, Matthew E., Belinda Phipson, Di Wu, et al. 2015. “Limma Powers Differential Expression Analyses for RNA-Sequencing and Microarray Studies.” Nucleic Acids Research 43 (7): e47. https://doi.org/10.1093/nar/gkv007.

Szklarczyk, Damian, Rebecca Kirsch, Mikaela Koutrouli, et al. 2023. “The STRING Database in 2023: Protein-Protein Association Networks and Functional Enrichment Analyses for Any Sequenced Genome of Interest.” Nucleic Acids Research 51 (D1): D638–46. https://doi.org/10.1093/nar/gkac1000.

Tyanova, Stefka, Tikira Temu, and Jürgen Cox. 2016. “The MaxQuant Computational Platform for Mass Spectrometry-Based Shotgun Proteomics.” Nature Protocols 11 (12): 2301–19. https://doi.org/10.1038/nprot.2016.136.