Biological Interpretation System

Published

Jun 2026

This chapter turns tables, figures, GO terms, pathways, and networks into a biological story.

Interpretation Questions

Ask:

Which proteins changed?
In which direction?
How strong is the change?
Are proteins functionally related?
Which GO terms or pathways are enriched?
Do networks reveal protein modules?
How do the findings answer the biological question?

From Results to Insight

DEP table
        ↓
ranked proteins
        ↓
GO terms
        ↓
pathways
        ↓
network modules
        ↓
biological themes
        ↓
reportable findings

# Biological Interpretation System

This chapter turns tables, figures, GO terms, pathways, and networks into a biological story.

## Interpretation Questions

Ask:

```text
Which proteins changed?
In which direction?
How strong is the change?
Are proteins functionally related?
Which GO terms or pathways are enriched?
Do networks reveal protein modules?
How do the findings answer the biological question?
```

## From Results to Insight

```text
DEP table
        ↓
ranked proteins
        ↓
GO terms
        ↓
pathways
        ↓
network modules
        ↓
biological themes
        ↓
reportable findings
```