Raw Data Expansion Roadmap

This Results-First Edition begins from processed proteomics results.

A future Raw Data Edition can expand backward into raw mass spectrometry processing.

Future Expansion

RAW files
        ↓
spectral processing
        ↓
peptide identification
        ↓
protein inference
        ↓
protein quantification
        ↓
differential abundance analysis
        ↓
results-first interpretation workflow

Possible Future Topics

• MaxQuant
• FragPipe
• DIA-NN
• Spectronaut-style outputs
• peptide-spectrum matches
• protein inference
• label-free quantification
• TMT/iTRAQ workflows